Environmental DNA reflects common mitochondrial haplotypic variation
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Aug 12, 2022 - R
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populationgenetics
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Repo containing all scripts associated with Mahoenui giant wētā population genomic analysis from GBS data
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Jan 13, 2025 - Shell
Repository of R functions and files to derive estimates and generate simulated data according to the methods and models described in "Bias-corrected maximum-likelihood estimation of multiplicity of infection and lineage frequencies". To import/merge molecular data of any type (STR, SNPs, amino acids) and format and apply further analysis use R/MLMO
statistical-learning biostatistics statistical-inference datavisualization dataanalysis populationgenetics
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Nov 27, 2023 - R
A variant-first, multi-modality CRISPR design framework that unifies SpCas9 nuclease, base-editor, and prime-editor chemistries under a single typed interface to deliver ranked candidate edits complete with calibrated uncertainty intervals, predicted outcome distributions, and ancestry-stratified, population-aware off-target safety reporting.
python rust machine-learning bioinformatics deep-learning genomics computational-biology crispr variant-calling clinvar uncertainty-estimation genome-editing benchmark-datasets pyo3 base-editing populationgenetics prime-editing haplotype-mapping off-target-analysis guide-rna-design
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Jun 9, 2026 - Python
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