Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)
Python library to facilitate genome assembly, annotation, and comparative genomics
A grammar of graphics for comparative genomics
An analysis and visualization platform for 'omics data
A genome visualization python package for comparative genomics
Eukaryotic Genome Annotation Pipeline
Chromosome visualization for the web
Build a partitioned pangenome graph from microbial genomes
HyPhy: Hypothesis testing using Phylogenies
A fast whole-genome aligner based on de Bruijn graphs
Recentrifuge: robust comparative analysis and contamination removal for metagenomics
Genome wide orthology inference and dNdS estimation
FastOMA is a scalable software package to infer orthology relationship.
A tool for drawing ANI clustermap between all-vs-all microbial genomes
A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category
A genome diagram generator for microbes and organelles
A Scalable GPU-Based Whole Genome Aligner, published in SC20: https://doi.ieeecomputersociety.org/10.1109/SC41405.2020.00043
zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
Guided synteny alignment between duplicated genomes (within specified quota constraint)
🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 🐖 🔁 🐐 🔁 🐎 🔁 🐈 🔁 🐕 🔁 🐁 🔁 🐒 🔁 🦧 🔁 🦍 🔁 🏃♀️
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