task_spatial_simulators 0.1.0

First release of the spatial simulator benchmark.

Core task documentation and API:

• Component types: Process Dataset, Method, Metric
• File formats: Single-Cell Dataset, Spatial Dataset, Solution, Score

Dataset processing components for fetching datasets from the SpatialSimBench figshare:

• Source: https://figshare.com/articles/dataset/SpatialSimBench_dataset/26054188
• Transforms the h5ads into standardised components

Simulation methods under src/methods/:

• scdesign2
• scdesign3_nb
• scdesign3_poisson
• sparsim
• splatter
• srtsim
• synsim
• zinbwave

Control methods under src/control_methods/:

• negative_normal
• negative_shuffle
• positive

Metrics under src/metrics/:

• ks_statistic_gene_cell
• ks_statistic_sc_features/

Documentation:

• Check the README.md and INSTRUCTIONS.md for how to use and extend the benchmark.