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Kraken2/build module does not export (undocumented) unmapped.txt files

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#168 In nf-core/createtaxdb;

· jfy133 opened on Apr 20, 2026

KMCP_COMPUTE not taxprofiler ready due to missing taxon files

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#167 In nf-core/createtaxdb;

· jfy133 opened on Apr 20, 2026

KAIJU_MKFMI not taxprofiler ready due to missing taxon files

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#166 In nf-core/createtaxdb;

· jfy133 opened on Apr 20, 2026

Better advise KMCP use shoudl generally should include --by-seq option

bugSomething isn't workingSomething isn't working

Status: Open.

#157 In nf-core/createtaxdb;

· jfy133 opened on Mar 22, 2026

Occasional 'java.util.ConcurrentModificationException' errors

bugSomething isn't workingSomething isn't working

Status: Open.

#114 In nf-core/createtaxdb;

· jfy133 opened on Oct 2, 2025

MALT should support parallel AA and DNA database building

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#112 In nf-core/createtaxdb;

· jfy133 opened on Sep 18, 2025

·  

2.2.0: Mystical Medusa

Consider adding a low-complexity sequence masking to genomes before building

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#96 In nf-core/createtaxdb;

· jfy133 opened on Jun 5, 2025

·  

2.2.0: Mystical Medusa

Consider using nf-boost to clean up intermediate files from GUNZIP/CAT processes?

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#43 In nf-core/createtaxdb;

· jfy133 opened on Oct 7, 2024

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2.2.0: Mystical Medusa

Consider input genome quality before building

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#27 In nf-core/createtaxdb;

· jfy133 opened on Feb 27, 2024

·  

2.2.0: Mystical Medusa

Consider database reduction options

enhancementImprovement for existing functionalityImprovement for existing functionality

Status: Open.

#16 In nf-core/createtaxdb;

· jfy133 opened on Dec 14, 2023

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2.2.0: Mystical Medusa