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Pull requests: galaxyproject/planemo

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Pull requests list

Fix false-positive RequiredFilesExist lint in shed_lint (#1646)
#1647 opened May 25, 2026 by mvdbeek Member Loading…
3 tasks done
1
Various fixes for targeting postgres in singularity
#1557 opened Jul 10, 2025 by mvdbeek Member Loading…
Add uvx_galaxy engine type
#1555 opened Jun 24, 2025 by mvdbeek Member • Draft
5
command used to list available workflows
#1533 opened Jun 3, 2025 by Smeds Contributor Loading…
2
update list invocation commands
#1530 opened Jun 2, 2025 by Smeds Contributor Loading…
1
This allows the user, during a run, to export it as a compressed arch…
#1520 opened Apr 25, 2025 by Smeds Contributor • Draft
18
first draft for instructions how to run planemo and submit jobs to a slurm cluster
#1512 opened Apr 1, 2025 by Smeds Contributor Loading…
1 of 3 tasks
5
pin default python version to the max currently allowed by galaxy pinnings
#1490 opened Jan 27, 2025 by bernt-matthias Collaborator Loading…
1
2
Check for empty shed fields
#1486 opened Dec 19, 2024 by bernt-matthias Collaborator Loading…
1
Don't assume default master key works
#1477 opened Sep 26, 2024 by mvdbeek Member Loading…
1
1
Rewrite tool linters defined in planemo help wanted
#1472 opened Jul 27, 2024 by bernt-matthias Collaborator • Draft
use target_str_to_targets from tool-util package
#1467 opened Jul 10, 2024 by bernt-matthias Collaborator Loading…
add assertion that autoupdate does not modify input description
#1451 opened May 28, 2024 by bernt-matthias Collaborator • Draft
Use proper tmpdir for jobfiles
#1438 opened Mar 19, 2024 by bernt-matthias Collaborator Loading…
2
Addition of metadata generation for planemo run
#1434 opened Feb 29, 2024 by Delphine-L Contributor • Draft
3
Improve docs with regards to running and testing workflows
#1426 opened Jan 31, 2024 by wm75 Member Loading…
7
Validate with jsonschema
#1417 opened Dec 8, 2023 by mvdbeek Member Loading…
6
Sync planemo and planemo virtual appliance docs
#1386 opened Sep 1, 2023 by bernt-matthias Collaborator Loading…
Extended container support
#1363 opened Apr 11, 2023 by bernt-matthias Collaborator Loading…
3 tasks done
10
Improve shed install for workflows
#1351 opened Feb 13, 2023 by mvdbeek Member • Draft
test: check if extra files were created in Galaxy's file_path
#1190 opened Sep 27, 2021 by bernt-matthias Collaborator Loading…
1
6
[WIP] Implement serve flag for planemo test
#1185 opened Aug 13, 2021 by simonbray Member • Draft
8
[WIP] Attempt to debug some issues with allure reporting of workflows.
#1183 opened Jul 28, 2021 by jmchilton Member Loading…
fix and complete metadata setting docs wip
#1167 opened May 4, 2021 by bernt-matthias Collaborator Loading…
ci_find*: include sub and parent dirs
#1130 opened Jan 17, 2021 by bernt-matthias Collaborator Loading…
1
6
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