refactor: rename plotting subpackage to visualization#21
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Align the (stub) plotting subpackage with RAVEN's folder layout, where pathway + plotting were unified into visualization/ (SysBioChalmers/RAVEN#614). - src/raven_python/plotting/ -> src/raven_python/visualization/ - pyproject optional-dependency extra [plotting] -> [visualization] (matplotlib); CI (.github/workflows/ci.yml) and ReadTheDocs (.readthedocs.yaml) install lines updated to match so the renamed extra still resolves. - docs updated: README, CHANGELOG, installation, docs/README, api/index, todo. The subpackage is an unimplemented stub (empty __init__), so nothing imports it and there is no behaviour change. Generic uses of the word "plotting" (seaborn / heatmap prose) are left as-is.
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What
Renames the (stub)
plottingsubpackage tovisualization, matching RAVEN's folder layout wherepathway/+plotting/were unified intovisualization/(SysBioChalmers/RAVEN#614). This is the deferred follow-up noted in #20.src/raven_python/plotting/→src/raven_python/visualization/[plotting]→[visualization](matplotlib).github/workflows/ci.yml) and ReadTheDocs (.readthedocs.yaml) install lines updated so the renamed extra still resolvesREADME.md,CHANGELOG.md,docs/installation.md,docs/README.md,docs/reference/api/index.md,docs/reference/todo.mdNotes
__init__.py), so nothing imports it — no behaviour change, no broken imports.visualization/name. The one remaining structural gap isreconstruction/metacyc/(feature work — porting MetaCyc — not a rename).