Pin dependency version bounds for all main dependencies

[RalfG]

Add lower and upper bounds to all core dependencies to prevent incompatible major versions from being pulled in. Most notably, pin pyteomics to < 5 to avoid breaking changes in downstream packages.

[codecov]

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 72.01%. Comparing base (1f695aa) to head (05be2f1).

Additional details and impacted files

@@           Coverage Diff           @@
##             main     #149   +/-   ##
=======================================
  Coverage   72.01%   72.01%           
=======================================
  Files          32       32           
  Lines        3248     3248           
=======================================
  Hits         2339     2339           
  Misses        909      909           

Flag	Coverage Δ
unittests	72.01% <100.00%> (ø)

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[paretje]

My only remark is that I guess it might be interesting to include #148 in the release