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Rerun flux balance analysis (cobra) #62
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priority:majorstate:openThis is still being plannedThis is still being plannedsubsystem:jupyter-notebookRelates to the jupyter notebookRelates to the jupyter notebooktype:bugThis isn't workingThis isn't workingtype:usabilityThis is impacting end-user usabilityThis is impacting end-user usability
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priority:majorstate:openThis is still being plannedThis is still being plannedsubsystem:jupyter-notebookRelates to the jupyter notebookRelates to the jupyter notebooktype:bugThis isn't workingThis isn't workingtype:usabilityThis is impacting end-user usabilityThis is impacting end-user usability
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If a user provides their own model in Step 6 AND is using IMAT, flux balance analysis should be re-run to provide flux values.
There is an example of running cobra flux analysis in "Optional: Generate Memote Reports" of the jupyter notebook