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Add support for additional/arbitrary masks denoting higher-order tissue structures #4

@afrendeiro

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@afrendeiro
  • Manually label structures (arteries lumen, extra cellular matrix) in image training data set
  • Predict for whole images
  • Segment structures or alternatively quantify (mean) probabilities per cell
  • Analyse number per ROI, shape per ROI
  • For each cell: check if contained within structure, measure distance to border

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