Some CI jobs that are installing more recent numpy (>=2.5) are now experiencing deprecation warnings relating to internal code in mrcfile that attempts to directly set numpy array dtype in a way that is now formally deprecated.
The authors are aware of the issue and working towards a fix, which we should plan to take when it is available.
In the interim I will try to make the failing test (test_image.py)more flexible to unblock our CI. Currently we have a test checking for a single MRC file corruption but in this new situation we end up with 2... I'll link that patch to this issue.
Some CI jobs that are installing more recent
numpy(>=2.5) are now experiencing deprecation warnings relating to internal code inmrcfilethat attempts to directly set numpy array dtype in a way that is now formally deprecated.The authors are aware of the issue and working towards a fix, which we should plan to take when it is available.
In the interim I will try to make the failing test (
test_image.py)more flexible to unblock our CI. Currently we have a test checking for a single MRC file corruption but in this new situation we end up with 2... I'll link that patch to this issue.